Egg Bites with Cottage Cheese Recipe – Deliciously Organic

Last Updated on February 2, 2026 by Carrie Korem, FNTP

These egg bites with cottage cheese are full of flavor and one of my favorite breakfasts to make ahead.

I love having something in the fridge that’s already done, especially on busy mornings. I just pop these in the oven, go get ready for the day, and by the time I come back into the kitchen, breakfast is ready.

They’re high in protein and healthy fats, very filling, and easy to customize.

I actually served these egg bites with cottage cheese on Christmas morning alongside my sourdough cinnamon rolls, and they were a huge hit with everyone.

If you’re looking for a simple, healthy breakfast you can prep ahead, this is such a good one to keep on repeat.

These egg bites are made with cottage cheese, cheddar, and scallions for lots of flavor, but you can easily switch things up based on what you have on hand.

Ingredients for Egg Bites

• 1 1/2 cups organic, whole cottage cheese (I prefer the brand, Kalona)
• 12 large eggs
• 1/2 tsp Celtic sea salt
• 1/2 cup scallions
• 2 cups cheddar

Storage and Reheating

I like to store these egg bites with cottage cheese in a glass container in the fridge for up to 5 days.

To reheat, place them on a plate and cover with a piece of parchment paper and then foil. Warm in the oven at 300ºF for about 15 minutes.

You can also reheat them gently in a skillet or toaster oven.

Frequently Asked Questions

Can I freeze egg bites?

It’s best if you don’t freeze them. The texture changes once thawed. Instead, make them ahead and store them in the refrigerator for up to one week.

Can I add other flavors to the egg bites?

Yes. These are very easy to customize. You can add:

More Breakfast Recipes to Enjoy

If you like simple, nourishing breakfasts like these egg bites with cottage cheese, here are a few other favorites you might enjoy:

Having easy breakfasts ready makes such a big difference in how your day starts. These egg bites are one of those recipes that just makes life easier.

Print

Egg Bites with Cottage Cheese Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star

No reviews

• Author: Carrie Korem, FNTP
• Prep Time: 20
• Cook Time: 25
• Total Time: 45 minutes
• Yield: Makes 1 dozen egg bites
• Category: Breakfast
• Method: Baking
• Cuisine: American
• Diet: Gluten-Free

• 1 1/2 cups cottage cheese (I prefer the Kalona Brand)
• 12 large eggs, divided
• 1/2 tsp Celtic sea salt
• 1/2 cup scallions, finely chopped
• 2 cups cheddar, grated

Instructions

Preheat the oven to 325ºF and adjust the rack to the middle position. Place a large baking sheet in the oven to preheat (you will place the muffin tin on this pan, so make sure it is big enough. Using a pastry brush, oil or butter each muffin cup. Bring a kettle of water to boil.

Meanwhile, place the cottage cheese in a food processor and blend until smooth. Add one egg to the processor and blend until smooth. Pour the cottage cheese mixture into a large mixing bowl and whisk in the remaining eggs and sea salt. 

Divide the scallions and cheese evenly in the prepared muffin cups. Using a ladle, evenly distribute the egg mixture over the cheese and scallions. Place the muffin tin on the hot baking sheet in the oven and very carefully, pour enough boiling water onto the baking sheet to fully cover the bottom. 

Bake for 25 minutes, until the egg bites register 170ºF. Cool for 10 minutes and serve. 

The egg bites can be stored in the refrigerator for up to 3 days and reheated in the oven. When I reheat them, I like to put them on a pan and cover with a piece of parchment and then foil and bake at 300ºF for about 15 minutes until hot.